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gnStringTools.h File Reference

#include <iostream>
#include <string>
#include <vector>
#include <stdlib.h>
#include <stdio.h>
#include "gn/gnDefs.h"

Go to the source code of this file.

Functions

unsigned int removeSpace (string &str)

void removeEndSpace (string &str)

bool isNewLine (char ch)

bool isWhiteSpace (char ch)

bool isSpace (char ch)

string uintToString (unsigned int value)

string ulongToString (unsigned long value)

string charArrayToString (char *charArray, unsigned int length)

bool isBase (char base)

void BaseCount (const string &bases, gnSeqI &a_count, gnSeqI &c_count, gnSeqI &g_count, gnSeqI &t_count, gnSeqI &other_count)

unsigned int parseValue (string &valueString)

int parseUintValue (string &valueString)

int parseIntValue (string &valueString)

vector< string > tokenizeString (const string &str, char delimiter='\t')

vector< string > tokenizeString (const char *str, unsigned int len, char delimiter='\t')

void standarizePathString (string &oFileName)

string getPathString (string oFileName)

string getFileString (string oFileName)

string getExtString (string oFileName)

string getFileNoExtString (string oFileName)

Function Documentation

void BaseCount ( const string & bases,

gnSeqI & a_count,

gnSeqI & c_count,

gnSeqI & g_count,

gnSeqI & t_count,

gnSeqI & other_count )

Definition at line 15 of file gnStringTools.cpp.
Referenced by gnGBKSource::Write().

string charArrayToString ( char * charArray,

unsigned int length )

string getExtString ( string oFileName )

Definition at line 264 of file gnStringTools.cpp.

string getFileNoExtString ( string oFileName )

Definition at line 274 of file gnStringTools.cpp.

string getFileString ( string oFileName )

Definition at line 257 of file gnStringTools.cpp.
Referenced by gnSourceFactory::AddSource(), and gnSourceFactory::HasSource().

string getPathString ( string oFileName )

Definition at line 248 of file gnStringTools.cpp.
Referenced by gnDNXSource::ParseStream().

bool isBase ( char base )

bool isNewLine ( char ch )

Definition at line 91 of file gnStringTools.cpp.
Referenced by gnFASSource::ParseStream(), and isSpace().

bool isSpace ( char ch )

Definition at line 109 of file gnStringTools.cpp.
Referenced by gnFASSource::ParseStream(), and removeEndSpace().

bool isWhiteSpace ( char ch )

Definition at line 100 of file gnStringTools.cpp.
Referenced by isSpace().

int parseIntValue ( string & valueString )

Definition at line 178 of file gnStringTools.cpp.

int parseUintValue ( string & valueString )

Definition at line 162 of file gnStringTools.cpp.

unsigned int parseValue ( string & valueString )

Definition at line 151 of file gnStringTools.cpp.

void removeEndSpace ( string & str )

Definition at line 74 of file gnStringTools.cpp.

unsigned int removeSpace ( string & str )

Definition at line 36 of file gnStringTools.cpp.

void standarizePathString ( string & oFileName )

Definition at line 239 of file gnStringTools.cpp.
Referenced by gnSourceFactory::HasPath(), gnSourceFactory::HasSource(), and gnSourceFactory::PathExists().

vector< string > tokenizeString ( const char * str,

unsigned int len,

char delimiter = '\t' )

Definition at line 215 of file gnStringTools.cpp.
Referenced by tokenizeString().

vector< string > tokenizeString ( const string & str,

char delimiter = '\t' )

string uintToString ( unsigned int value )

Definition at line 118 of file gnStringTools.cpp.
Referenced by gnGBKSource::Write(), and gnFASSource::Write().

string ulongToString ( unsigned long value )

Definition at line 134 of file gnStringTools.cpp.

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